Alumni

MASTER ALUMNI
NAME THESIS TITLE ADVISOR YEAR
Habibe Cansu DEMİREL Modeling the tumor-specific network rewiring by integrating alternative splicing events with structural interactome Assoc. Prof. Dr. Nurcan TUNÇBAĞ 2019
Meriç KINALI Leveraging the human kinome for anticancer agent cytotoxicity potency prediction Prof. Dr. Rengül ÇETİN ATALAY 2019
Cansu DİNÇER 3D spatial organization and network-guided comparison of mutation profiles in glioblastoma Assoc. Prof. Dr. Nurcan TUNÇBAĞ 2019
Elif BOZLAK de novo SNP calling and demographic inference using trio genome data Asst. Prof. Dr. Aybar Can ACAR 2019
Evrim FER Testing natural selection on polygenic trait-associated alleles in Anatolia using neolithic and present-day human genomes Assoc. Prof. Dr. Mehmet SOMEL 2019
Gökçe SENGER Integrative network modeling of the dasatinib treatment in glioblastoma stem cells Assoc. Prof. Dr. Nurcan TUNÇBAĞ 2019
Alperen TACİROĞLU ODYSSEY: a tool for microRNA-mRNA expression and interaction visualization Asst. Prof. Dr. Aybar Can ACAR 2018
Tuğba KAYA Structural mapping and network analysis of patient-specific mutations in glioblastoma Assoc. Prof. Dr. Nurcan TUNÇBAĞ 2018
Sultan Nilay CAN Mapping and analysis of human disease network map (diseasome) on mouse genotype & phenotype network Prof. Dr. Rengül ÇETİN ATALAY 2017
Semih ALPSOY Drug selection for malignant melanoma using biomarkers generated by weighted gene co-expression network analysis (WGCNA) Assoc. Prof. Dr. Yeşim AYDIN SON 2017
Güngör BUDAK Reconstruction of the temporal signaling network in salmonella infected human cells Assoc. Prof. Dr. Yeşim AYDIN SON 2016
Mona SHOJAEI Identification of gene mutations involved in drug resistance in liver cancer using RNA-seq data analysis Prof. Dr. Rengül ÇETİN ATALAY 2016
Atefeh LAFZI Investigating the role of RNA-binding proteins (RBPs) in explaining differential gene expression in cancer Assoc. Prof. Dr. Yeşim AYDIN SON
2016
Gökhan ERSOY A multi-layered graphical model of the relation among SNPs, genes, and pathways based on subgraph search Assoc. Prof. Dr. Yeşim AYDIN SON
2015
Bilge SÜRÜN Analysis of motifs in microRNA-transcription factor gene regulatory networks Asst. Prof. Dr. Aybar Can ACAR 2014
Burcu YALDIZ Investigation of structural properties of methylated human promoter regions in terms of DNA helical rise Assoc. Prof. Dr. Yeşim AYDIN SON 2014
Kübra NARCI Design of a sequence-based miRNA clustering method; analysis of fungal milRNAs and host organism target genes Prof. Dr. Mahinur S. AKKAYA 2014
Simge Gökçe ÖRSÇELİK Prediction of insulin resistance by statistical tool MARS  Prof. Dr. Gerhard-Wilhelm WEBER 2014
Ceyhun GEDİKOĞLU Integration of METU-SNP databases via RDF For Pi-SNP web service  Assoc. Prof. Dr. Yeşim AYDIN SON 2014
Gökçe OĞUZ Cytokine polymorphism catalog (CytoCAT) for the analysis of phenotype associations  Asst. Prof. Dr. Aybar Can ACAR 2014
Onur BALOĞLU Analysis of 3'UTR shortening events in breast cancer Prof. Dr. Tolga CAN 2013
Hüseyin Alper DÖM Investigation of schizophrenia-related genes and pathways through genome-wide association studies Assoc. Prof. Dr. Yeşim AYDIN SON 2013
Erhan AKDEMİR A framework for gene co-expression network analysis of lung cancer Prof. Dr. Tolga CAN 2013
Sevgin DEMİRCİ mtDNA based genetic diversity of native sheep breeds and Anatolian mouflon in Turkey
Prof. Dr. İnci TOGAN 2012
Sinan Uğur UMU Mining fungal effector candidates in biotrophic plant pathogens: rusts and mildews Prof. Dr. Mahinur S. AKKAYA 2012
Burak DEMİRAY Investigation of human promoter CpG content and methylation profiles at different conservation levels Assoc. Prof. Dr. Yeşim AYDIN SON 2012
Eyüp Serdar AYAZ Reconstructing signaling pathways from RNAi data using genetic algorithms Prof. Dr. Tolga CAN 2011
Onat KADIOĞLU Determination of performance parameters for AHP based single nucleotide polymorphism (SNP) prioritization approach on Alzheimer’s disease data Assoc. Prof. Dr. Yeşim AYDIN SON 2011
Hande ACAR Bioinformatic analyses in microsatellite-based genetic diversity of Turkish sheep breeds Prof. Dr. İnci TOGAN 2010