| MASTER ALUMNI |
| NAME |
THESIS TITLE |
ADVISOR |
YEAR |
| Hüseyin Cahit BURDUROĞLU |
Comparative analysis of brain cell cultures and tissues in Alzheimer’s disease based on differential expression and gene set enrichment |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2023 |
| Ömer Faruk YAZAR |
Utility of resequencing and reanalysis for unsolved rare diseases |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2022 |
| İrem AKSOY |
Biochemical modeling of logic gates in prokaryotic transcriptional regulation |
Assist. Prof. Dr. Aybar Can ACAR |
2022 |
| Arda ESKİN |
RANKPCSF: a disease module identification method by integrating network propagation with prize-collecting steiner forest |
Assist. Prof. Dr. Burçak OTLU |
2022 |
| Kaan BÜYÜKALTAY |
Implementation of Krona into QIIME 2 |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2022 |
| Onur Savaş KARTLI |
Predicting multiple types of biological relationships with integrative non-negative matrix factorization |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2022 |
| Sevda RAFATOV |
Comparision of entropy and ensemble based feature selection through network analysis of alzheimers disease-associated variants |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2022 |
| Fatma Ülkem KASAPOĞLU |
Cancer driver subnetwork identification by network dismantling methods |
Assoc. Prof. Dr. Nurcan TUNÇBAĞ |
2021 |
| Gökçe ABAY |
Biological data integration and relation prediction by matrix factorization |
Asst. Prof Dr. Aybar Can ACAR |
2020 |
| Fatma CANKARA |
Prediction of the effects of single amino acid variations on protein functionality with structural and annotation centric modeling |
Assoc. Prof. Dr. Nurcan Tunçbağ |
2020 |
| Rumeysa FAYETÖRBAY |
Network-based discovery of molecular targeted agent treatments in hepatocellular carcinoma |
Assoc. Prof. Dr. Nurcan TUNÇBAĞ |
2020 |
| Habibe Cansu DEMİREL |
Modeling the tumor-specific network rewiring by integrating alternative splicing events with structural interactome |
Assoc. Prof. Dr. Nurcan TUNÇBAĞ |
2019 |
| Meriç KINALI |
Leveraging the human kinome for anticancer agent cytotoxicity potency prediction |
Prof. Dr. Rengül ÇETİN ATALAY |
2019 |
| Cansu DİNÇER |
3D spatial organization and network-guided comparison of mutation profiles in glioblastoma |
Assoc. Prof. Dr. Nurcan TUNÇBAĞ |
2019 |
| Elif BOZLAK |
de novo SNP calling and demographic inference using trio genome data |
Asst. Prof. Dr. Aybar Can ACAR |
2019 |
| Evrim FER |
Testing natural selection on polygenic trait-associated alleles in Anatolia using neolithic and present-day human genomes |
Assoc. Prof. Dr. Mehmet SOMEL |
2019 |
| Gökçe SENGER |
Integrative network modeling of the dasatinib treatment in glioblastoma stem cells |
Assoc. Prof. Dr. Nurcan TUNÇBAĞ |
2019 |
| Alperen TACİROĞLU |
ODYSSEY: a tool for microRNA-mRNA expression and interaction visualization |
Asst. Prof. Dr. Aybar Can ACAR |
2018 |
| Tuğba KAYA |
Structural mapping and network analysis of patient-specific mutations in glioblastoma |
Assoc. Prof. Dr. Nurcan TUNÇBAĞ |
2018 |
| Sultan Nilay CAN |
Mapping and analysis of human disease network map (diseasome) on mouse genotype & phenotype network |
Prof. Dr. Rengül ÇETİN ATALAY |
2017 |
| Semih ALPSOY |
Drug selection for malignant melanoma using biomarkers generated by weighted gene co-expression network analysis (WGCNA) |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2017 |
| Güngör BUDAK |
Reconstruction of the temporal signaling network in salmonella infected human cells |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2016 |
| Mona SHOJAEI |
Identification of gene mutations involved in drug resistance in liver cancer using RNA-seq data analysis |
Prof. Dr. Rengül ÇETİN ATALAY |
2016 |
| Atefeh LAFZI |
Investigating the role of RNA-binding proteins (RBPs) in explaining differential gene expression in cancer |
Assoc. Prof. Dr. Yeşim AYDIN SON
|
2016 |
| Gökhan ERSOY |
A multi-layered graphical model of the relation among SNPs, genes, and pathways based on subgraph search |
Assoc. Prof. Dr. Yeşim AYDIN SON
|
2015 |
| Bilge SÜRÜN |
Analysis of motifs in microRNA-transcription factor gene regulatory networks |
Asst. Prof. Dr. Aybar Can ACAR |
2014 |
| Burcu YALDIZ |
Investigation of structural properties of methylated human promoter regions in terms of DNA helical rise |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2014 |
| Kübra NARCI |
Design of a sequence-based miRNA clustering method; analysis of fungal milRNAs and host organism target genes |
Prof. Dr. Mahinur S. AKKAYA |
2014 |
| Simge Gökçe ÖRSÇELİK |
Prediction of insulin resistance by statistical tool MARS |
Prof. Dr. Gerhard-Wilhelm WEBER |
2014 |
| Ceyhun GEDİKOĞLU |
Integration of METU-SNP databases via RDF For Pi-SNP web service |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2014 |
| Gökçe OĞUZ |
Cytokine polymorphism catalog (CytoCAT) for the analysis of phenotype associations |
Asst. Prof. Dr. Aybar Can ACAR |
2014 |
| Onur BALOĞLU |
Analysis of 3'UTR shortening events in breast cancer |
Prof. Dr. Tolga CAN |
2013 |
| Hüseyin Alper DÖM |
Investigation of schizophrenia-related genes and pathways through genome-wide association studies |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2013 |
| Erhan AKDEMİR |
A framework for gene co-expression network analysis of lung cancer |
Prof. Dr. Tolga CAN |
2013 |
| Sevgin DEMİRCİ |
mtDNA based genetic diversity of native sheep breeds and Anatolian mouflon in Turkey
|
Prof. Dr. İnci TOGAN |
2012 |
| Sinan Uğur UMU |
Mining fungal effector candidates in biotrophic plant pathogens: rusts and mildews |
Prof. Dr. Mahinur S. AKKAYA |
2012 |
| Burak DEMİRAY |
Investigation of human promoter CpG content and methylation profiles at different conservation levels |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2012 |
| Eyüp Serdar AYAZ |
Reconstructing signaling pathways from RNAi data using genetic algorithms |
Prof. Dr. Tolga CAN |
2011 |
| Onat KADIOĞLU |
Determination of performance parameters for AHP based single nucleotide polymorphism (SNP) prioritization approach on Alzheimer’s disease data |
Assoc. Prof. Dr. Yeşim AYDIN SON |
2011 |
| Hande ACAR |
Bioinformatic analyses in microsatellite-based genetic diversity of Turkish sheep breeds |
Prof. Dr. İnci TOGAN |
2010 |